ICERM Wiki

User Guides and Systems Documentation

User Tools

Site Tools


oscar:modules

Oscar: Software Modules

If you require a software package that is not currently available on the Oscar cluster, please contact ICERM's IT staff and we will work with CCV to get the software installed.

Currently Available Modules

This list is current as of May 18, 2020. To see the most up to date list of software modules, log into your Oscar account and run the command module avail.

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
JAGS/4.2.0               cesm_post_process/Oct18  pigz/2.4
bxh_xcede_tools/1.11.14  confocal/1.0
~~~~~~~~~~~~~~~~~~~~~~ category:  Microstructure modeling ~~~~~~~~~~~~~~~~~~~~~~
oof2/2.1.17
~~~~~~~~~~~~~~~~~~~~~~~~~ category:  access controlled ~~~~~~~~~~~~~~~~~~~~~~~~~
Molpro/2012.1.15       gaussian/g09           vasp/5.4.4
Molpro/2015_gcc        gaussian/g09-D01       vasp/5.4.4_intel
Molpro/2015_serial     gaussian/g09-D01-TEST  vasp/5.4.4a
Molpro/2018.2_ga       vasp/5.4.1
Molpro/2018.2_no_ga    vasp/5.4.1_debug
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  chemistry ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
schrodinger/2017-3  schrodinger/2020-1
~~~~~~~~~~~~~~~~~~~~~~~~ category:  graph partitioning ~~~~~~~~~~~~~~~~~~~~~~~~~
metis/5.1.0     parmetis/4.0.3  scotch/6.0.4
~~~~~~~~~~~~~~~~~~~~~~~~~ category:  image processing ~~~~~~~~~~~~~~~~~~~~~~~~~~
multinest/3.10   openslide/3.4.1  pstokes/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  libraries ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
astropy/3.2.1                     pcl/1.9.1_nurbs
astroquery/3.0.9                  scalapack/2.0.2
blas/3.7.0                        tensorflow/1.1.0_cpu
cudnn/5.1                         tensorflow/1.1.0_gpu
cudnn/6.0                         tensorflow/1.13.1_cpu_py3
cudnn/7.0                         tensorflow/1.13.1_gpu
cudnn/7.4                         tensorflow/1.13.1_gpu_keras
cudnn/7.6                         tensorflow/1.13.1_gpu_py3
cudnn/7.6.5                       tensorflow/1.14.0_gpu_py36
dlib/19.17                        tensorflow/1.4.1_cpu
flann/1.8.4                       tensorflow/1.4.1_cpu_py3
hnn/1.0                           tensorflow/1.4.1_gpu
horovod/0.16                      tensorflow/1.4.1_gpu_py3
lapack/3.4.2                      tensorflow/1.4.1_gpu_py3_cuda9.1
lapack/3.6.0                      tensorflow/1.5.0_cpu_py3
lapack/3.7.0                      tensorflow/1.5.0_gpu
mumps/5.0.2                       tensorflow/1.5.0_gpu_py3
mumps/5.0.2-seq                   tensorflow/2.0.0_cpu_py37
pcl/1.9.1                         tensorflow/2.0.0_gpu_py37
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  library ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
openslide-python/1.1.1
~~~~~~~~~~~~~~~~~~~~~~~~~ category:  machine learning ~~~~~~~~~~~~~~~~~~~~~~~~~~
keras/2.0.9      keras/2.1.1      keras/2.1.3_py3  nccl/2.4.7
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  math ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gsl/1.15  gsl/2.3   gsl/2.5
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  package ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
subread/1.6.2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  software ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mriconvert/2.1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  utility ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mriconvert/2.1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category:  visualization ~~~~~~~~~~~~~~~~~~~~~~~~~~~
mayavi/4.6.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: (none) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HiC-Pro/2.7.8            libsodium/1.0.17         repeatmasker/4.1.0
HiC-Pro~/2.10.0          mumax/3.9.3              repeatmodeler/1.0.11
awscli/1.0               ncl/6.4.0                siesta/3.2
canu/1.7.1               neuron/7.5               siesta/4.1
dropest/0.86             nvidia-driver/440.33.01  skewer/0.2.1
fiji/2017-java6          pdflib/7.0.5             squashfs/4.3
fmri/20.0.0              pypy/6.0.0_2.7           tmux/2.8
fv/5.5                   pypy/6.0.0_3.5           topcat/4.7
grads/2.2.0              pypy/7.3.0_3.6           transrate/1.0.3
hotnet/1.0               repeatmasker/4.0.7       vscode/1.22
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Applied Maths ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
oof2/2.1.17
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Astrophysics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
polychord/1.0  polychord/2.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Bioinformatics ~~~~~~~~~~~~~~~~~~~~~~~~~~~
MultiQC/1.0    muscle/3.8.31
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: CAD ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
freecad/0.18  librecad/2.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Chemistry ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dalton/2018.0
~~~~~~~~~~~~~~~~~~~~~~~ category: Computer Architecture ~~~~~~~~~~~~~~~~~~~~~~~~
risc/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: EDA tools ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cadence/IC06.18.090
~~~~~~~~~~~~~~~~~~~~ category: Executable for ceckpointings ~~~~~~~~~~~~~~~~~~~~
dmtcp/2.6.0
~~~~~~~~~~~~~~~~~~~ category: Flag for CMAKE for fast build ~~~~~~~~~~~~~~~~~~~~
ninja/1.9.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: GENETEICS ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensoft/6.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Genomic ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Genrich/0.5  mcscanx/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Genomic Library ~~~~~~~~~~~~~~~~~~~~~~~~~~~
redundans/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Genomics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
baypass/2.2      beast/2.5.2      kissplice/2.5.1
beast/1.10.4     kissplice/2.5.0
~~~~~~~~~~~~~~~~~~~ category: Genomics Sequencing Alignment ~~~~~~~~~~~~~~~~~~~~
qualimap/2.2.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Graphics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
beagle/1.0.0
~~~~~~~~~~~~~~~~~~~~~~~~ category: Helper function type ~~~~~~~~~~~~~~~~~~~~~~~~
datamash/1.3
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: I/O ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdo/1.9.8                      nco/4.6.6
cdo/1.9.9                      nco/4.8.2
hdf5/1.10.0                    netcdf/3.6.3
hdf5/1.10.1_parallel           netcdf/4.4.1.1_gcc
hdf5/1.10.5                    netcdf/4.4.1.1_intel
hdf5/1.10.5_fortran            netcdf/4.4.1.1_pgi
hdf5/1.10.5_openmpi_3.1.3_gcc  netcdf/4.7.0_intel2019.3
hdf5/1.10.5_openmpi_3.1.6_gcc  sqlite/3.25.2
hdf5/1.10.5_openmpi_4.0.0_gcc  sqlite/3.31.1
hdf5/1.10.5_parallel           udunits/1.12.11
jasper/1.900.1-intel           udunits/2.2.24
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: IDE ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
meshlab/20190129_qt59  spyder/3.3.5
~~~~~~~~~~~~~~~~~ category: Image processing and visualization ~~~~~~~~~~~~~~~~~
opencv-python/4.1.0.25
~~~~~~~~~~~~~~~~~~~~~~~ category: Library for optimizer ~~~~~~~~~~~~~~~~~~~~~~~~
numbbo/2.3_python2  numbbo/2.3_python3
~ category: Material sceince: https://icet.materialsmodeling.org/overview.html ~
icet/0.3
~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Medical imaging ~~~~~~~~~~~~~~~~~~~~~~~~~~~
mricrogl/1.0
~~~~~~~~~~~~~~~ category: Multifunctional Wavefunction Analyzer ~~~~~~~~~~~~~~~~
multiwfn/3.3.9
~~~~~~~~~~~~~~~~~~~~~~~~~ category: Numerical Library ~~~~~~~~~~~~~~~~~~~~~~~~~~
ngsolve/6.2.1901
~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Numerical Solver ~~~~~~~~~~~~~~~~~~~~~~~~~~
dedalus/2.1810   dedalus/2.1905   dedalus/Sep2019  nektar++/4.5.0
~~~~~~~~~~~~~~~~~~~~ category: Tool for Image Manipulation ~~~~~~~~~~~~~~~~~~~~~
netpbm/10.47.71
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Utility ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
globus/1.11
~~~~~~~~~~~~~~~ category: Visualization Package Qt's Python API ~~~~~~~~~~~~~~~~
pyqt/4.12.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: X ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
turbovnc/2.1.1   turbovnc/2.2.1   turbovnc/2.2.b1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: astronomy ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ares/0.1                galfit/3.0.5            sextractor/2.19.5
ares/0.5                iraf/2.16               sextractor/2.8.6
ccfits/2.5              iraf/2.16.1+2018.11.01  supermongo/2.4.34
cfitsio/3.450           lsst/14.0               swarp/2.38
cfitsio/3.48            planck_likelihood/3.0   theli/1.9.5
ds9/7.6                 scamp/2.0.4             wcstools/3.9.5
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: astrophysics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fiat/Oct2019
~~~~~~~~~~~~~~~~~~~~~~~~~ category: astropy computing ~~~~~~~~~~~~~~~~~~~~~~~~~~
astropy/3.2.1
~~~~~~~~~~~~~~~~~~~~~~~~ category: astroquery computing ~~~~~~~~~~~~~~~~~~~~~~~~
astroquery/3.0.9
~~~~~~~~~~~~~~~~~~~~~ category: binary for genome studies ~~~~~~~~~~~~~~~~~~~~~~
bedGraphToBigWig/1.04
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: bio ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SNAP/2013-11-29              metavelvet/1.2.01
abyss/2.1.1                  migrate/3.6.11
ale/20140120                 mira/4.0.2
aliview/1.25                 mne/0.17.0
amplisat/20170208            mothur/1.39.5
angsd/0.920                  mrbayes/3.2.6
anvio/5.2                    msmc/1.0.0
anvio/5.5                    msmc/1.1.0
anvio/6.1                    msmc/2.1.2
arb/6.0.6                    msprime/0.7.0
augustus/3.3                 msprime/0.7.2
bamcleave/Oct2018            mummer/4.0.0.beta2
bamtools/2.3.0               namd/2.11-multicore
bamtools/2.4.1               namd/2.13b1-multicore
bbmap/38.23                  nextclip/1.3.1
bbtools/38.12                nipype/1.5.0
bcftools/1.9                 nseg/20181012
bcl2fastq/2.20.0             obitools/1.2.12
bedops/2.4.35                oligotyping/2.0
bedtools/2.25.0              opera/2.0.6
bedtools/2.26.0              orthomcl/2.0.9
biolite/1.0.0                paml/4.8
biomed/1.0                   pandaseq/2.11
biopython/1.66               paup/4.0a157
biopython/1.73               paup/4.0a166
bismark/0.20.0               pbsuite/15.8.24
blast/2.2.30+                pcangsd/0.98
blast/2.6.0+                 picard-tools/2.17.11
blast/2.7.1+                 picard-tools/2.9.2
blast/2.8.1+                 pilon/1.22
blast/2.9.0+                 plink/1.07
blat/36x2                    plink/1.90
bowtie/1.2.0                 plink/2.00
bowtie/2.4.1                 polyphen/2.2.2
bowtie2/2.3.0                poolparty/0.8
bowtie2/2.3.5.1              popoolation2/1.201
braker/2.1.0                 prinseq/0.20.4
busco/3.0.2                  prodigal/2.6.3
bwa/0.7.15                   psmc/0.6.5
cantera/5.9.7                psmc/0.6.5a
ccp4/7.0                     pymol/2.2b
circlator/1.5.5              qctool/2.0
conn/16b                     qiime/1.9.1
conn/18a                     quast/5.0.0
conn/18b                     raremetal/4.14.1
connectome_workbench/1.3.1   raxml/8.2.10
connectome_workbench/1.3.2   raxml-ng/0.9.0
cpac/1.0.1                   recon/1.08
cpac/1.5.0                   repeatscout/1.0.5
cufflinks/2.2.1              revbayes/1.0.5
cutadapt/1.14                revbayes/1.0.6
dada2/1.4.1                  rmblastn/2.10.0
dada2/1.8                    rmblastn/2.6.0
dbg2olc/Sep2018              rsem/1.3.1
dendropy/4.2.0               salmon/0.11.3
diamond/0.9.12               salmon/0.8.2
diamond/0.9.24               salmon/1.0.0
dida/1.0.1                   salmon/1.2.0
diffreps/1.55.6              samblaster/0.1.24
dlcpar/1.1                   samtools/0.1.18
edge-pro/1.3.1               samtools/1.3.1
eems/1.0                     samtools/1.4.1
emboss/6.6.0                 samtools/1.9
entap/0.8.1-beta             schrodinger/2017-3
entap/0.8.4-beta             schrodinger/2020-1
exonerate/2.2.0              selscan/1.2.0a
fastme/2.1.5                 seqkit/0.10.1
fastqc/0.11.5                seqtk/1.3
fastsimcoal/2                sga/0.10.15
fasttree/2.1.10              sift/6.2.1
fasttree/2.1.11              sift4g/2.0.0
fastuniq/1.1                 skesa/1.68
fastx-toolkit/2.6            slicer/4.10.0
fgap/1.8.1                   slim/3.1
fgbio/0.6.1                  slim/3.2.1
figtree/1.4.4                slim/3.3
flashpca/2.0                 snippy/Oct2017
freebayes/1.1.0              spades/3.10.1
freebayes/1.2.0              spades/3.13.0
garlic/1.1.6                 span/0.10.0.4787
gatk/4.0.9.0                 spm/spm12
gatk/4.1.6.0                 sratoolkit/2.10.5
gdcclient/1.4.0              sratoolkit/2.8.2-1
genemark/4.33                stacks/2.2
hapbin/1.3.0                 stampy/1.0.32
hisat2/2.1.0                 star/2.6.1b
hmmer/3.1b2                  star/2.7.2a
homer/4.10                   star/2.7.3a
hotnet2/1.2.1                starfusion/1.7.0
htseq/0.11.1                 starfusion/1.8.1
htseq/0.9.1                  stringtie/1.3.3b
idba/1.1.3                   stringtie/1.3.4d
idemp/20180928               tabix/0.2.6
interproscan/5.26-65.0       tablemaker/2.1.1
interproscan/5.27-66.0       taxonkit/0.3.0
interproscan/5.28-67.0       tophat/2.1.1
interproscan/5.32-71.0       transabyss/2.0.1
interproscan/5.33-72.0       transindel/20181017
iq-tree/1.6.7                trf/4.09
jellyfish/1.1.11             trimal/1.4
jellyfish/2.2.10             trimgalore/0.5.0
kneaddata/0.6.1              trimmomatic/0.36
kraken/2.0.7-beta            trinity/2.4.0
kraken/2.0.9-beta            trinity/2.8.4
last/956                     usearch/5.2.32
macs/2.1.1                   usearch/8.1.1861
macs/2.2.6                   varscan/2.4.3
mafft/7.310-with-extensions  vcftools/0.1.16
maker/2.31.10                velvet/1.2.10
marsbar/0.42                 velvet/1.2.10a
maxbin2/2.2.5                viennarna/2.4.9
megahit/1.1.3                vmd/1.9.3
meraculous/2.2.6             vsearch/2.11.1
metabat/2.12.1               weblogo/2.8.2
metaphlan/2.6.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: bioinformatics ~~~~~~~~~~~~~~~~~~~~~~~~~~~
umitools/1.0.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: biology ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
haplostrips/1.2.1  libBigWig/0.4.4    mmsplice/0.2.7
htslib/1.9         meme/5.0.5         wiggletools/1.2.3
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: build tool ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
scons/3.0.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: cave ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gigapixelviewer/alpha  minvr/dev_ben          vrg3d/265_compat
minvr/0.3master        planetaryviewer/alpha  vrg3d/265_demos
minvr/0.4              scalable/20150828      vrpn/7.33
minvr/beta             scalable/opengl32+
minvr/beta-bleeding    vrg3d/265
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: chemistry ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Molpro/2012.1.15              mrcc/2014-intel
Molpro/2015_gcc               mrcc/2014-intel-threaded
Molpro/2015_serial            mrcc/2018-intel
Molpro/2018.2_ga              mrcc/2018-intel-threaded
Molpro/2018.2_no_ga           n2p2/1.0.0
ambertools/amber16-gpu        nwchem/6.8-openmpi
ambertools/amber17            openbabel/2.4.1
ambertools/amber17_lic        openbabel/3.0.0
ase/3.13.0                    openmolcas/18.09.617
ase/3.8.1                     orca/4.0.1.2
bagel/1.2.2                   orca/4.1.1
cp2k/7.1                      orca/4.2.1
crossrate/2016.3.23           prophet/augustegm_1.2
dacapo/2.7.16_mvapich2_intel  pyscf/1.4.7
elk/5.2.14                    pyscf/1.6.3
gaussian/g09                  qchem/5.0.2
gaussian/g09-D01              qchem/5.0.2-openmpi
gaussian/g09-D01-TEST         qmcpack/3.7.0
gaussview/14Aug20             qmcpack/3.9.1
gromacs/2016.6                qmcpack/3.9.1_openmpi_3.1.6
gromacs/2018.2                quantumespresso/6.1
gromacs/2018.2_gpu            quantumespresso/6.3
gromacs/2020.1                quantumespresso/6.4
hande/1.1.1                   quantumespresso/6.4.1
hande/1.1.1_64                rotd/2014-11-15_mvapich2
hande/1.1.1_debug             sharc/2.0
hotbit/10mar17                sharc/2.1.1
lammps/11Aug17                sharc/2.1.1_intel
lammps/11Aug17_serial         vasp/5.4.1
lammps/16Mar18                vasp/5.4.1_debug
lammps/17Nov16                vasp/5.4.4
lammps/22Aug18                vasp/5.4.4_intel
lammps/7Aug19                 vasp/5.4.4a
molden/5.7                    xcrysden/1.5.60
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: class ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
class/1435
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: clients ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aspera/3.8.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: climate ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cesm/1.2.1     cesm/2.1.1     esmf/8.0.0     esmf/8.1.0b11
cesm/1.2.2     esmf/7.1.0r    esmf/8.0.0b
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: compilers ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Xvfb/1.10.4        cuda/8.0.61        gcc/6.2            intel/2019.3
clang/3.9.1        cuda/9.0.176       gcc/6.3            java/8u111
clang/7.0.0        cuda/9.1.85.1      gcc/7.2            java/jdk-12.0.2
clang/7.1.0        cuda/9.2.148       gcc/8.3            llvm/3.8.1
cuda/10.0.130      gcc/4.5.4          intel/2011.11.339  llvm/4.0.0
cuda/10.1.105      gcc/4.7.2          intel/2013.1.106   nag/6.2
cuda/10.2          gcc/4.9.4          intel/2017.0       pgi/16.7
cuda/7.5.18        gcc/5.4            intel/2018.1       swig/3.0.10
~~~~~~~~~~~~~~~~~~~~~~~ category: computer architecture ~~~~~~~~~~~~~~~~~~~~~~~~
llvmOpenmp/1.0  llvmOpenmp/2.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: containers ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
singularity2/2.5.2
~~~~~~ category: cross webbrowser web application development environment ~~~~~~
chromedriver/2.46
~~~~~~~~~~~~~~ category: data analysis(http://www.mega-nerd.com/) ~~~~~~~~~~~~~~
libsnd/1.0.28
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: data science ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
catboost/0.8.1      manureadr/1.0       pandas/py_3.6.6
catboost/0.8.1_py3  pandas/py_3.5.2
~~~~~~~~~~~~~~~~~~~~~~~ category: data structure library ~~~~~~~~~~~~~~~~~~~~~~~
dcm2bids/2.1.4
~~~~~~~~~~~~~~~~~~~~~~ category: debugging and profiling ~~~~~~~~~~~~~~~~~~~~~~~
forge/18.2.3  forge/19.1.2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: dev ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
googletest/1.8.0  qemu/4.1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: devel ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bazel/0.23.0           glew/1.13.0            opengl/nvidia-410.72
bazel/0.25.2           glew/2.1.0             protobuf/3.4.1
bazel/0.4.4            opengl/mesa-12.0.6     protobuf/3.6.0_gcc5.4
bazel/0.5.4            opengl/nvidia-375.66
bazel/1.2.1            opengl/nvidia-390.30
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: engineering ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
abaqus/2017             comsol/5.4              synopsys/L_2016.03-SP2
abaqus/6.12sp2          su2/7.0.2
ansys/18.1              synopsys/2018.06
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: fMRI ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
brainiak/Feb2018
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: fonts ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
freetype/2.7.1
~~~~~~~~~~~~~~~~~~~~~~~ category: gene and species tree ~~~~~~~~~~~~~~~~~~~~~~~~
phyldog/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: genomic ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
admixture/1.3.0           glactools/1.0.7           pybigwig/0.3.15
deeptools/3.2.1           partitionfinder/2.1.1     pysam/0.15.2
deeptoolsintervals/0.1.7  py2bit/0.3.0              pyslim/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: genomics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
clustal_omega/1.2.4  relernn/6Dec2019
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: graphics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuplot/5.2.3      inkscape/Sep-2019
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: image ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
c3d/1.0.0          imagej/1.52a       leptonica/1.79.0
ffmpeg/3.2.4       imagemagick/7.0.7  libgd/2.2.5
ffmpeg/4.0.1       isis/3.5.1         openexr/2.2.1
~~~~~~~~~~~~~~~~~~~~~~~~~~ category: image converter ~~~~~~~~~~~~~~~~~~~~~~~~~~~
mriconvert/2.1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~ category: image processing ~~~~~~~~~~~~~~~~~~~~~~~~~~
libgif/5.1.9            libjpeg-turbo/2.0.2     openjpeg/2.3.1
libjpeg/9.0             mayavi/4.6.0            openslide-python/1.1.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: languages ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
R/3.3.2              julia/0.7.0          perl/5.8.9
R/3.4.0              julia/1.0            python/2.7.12
R/3.4.3              julia/1.0.2          python/2.7.12_clean
R/3.4.3_mkl          julia/1.1.0          python/2.7.16
R/3.4.4              julia/1.2.0          python/3.5.2
R/3.5.2              julia/1.4.1          python/3.6.6
R/3.6.0              lua/5.3.4            python/3.6.6_test
R/3.6.3              maple/16             python/3.6.8_gcc8.3
R/4.0.0              mathematica/10.3.1   python/3.7.4
anaconda/2-4.3.0     mathematica/11.0     qt/3.3.8b
anaconda/2-5.3.0     mathematica/12.0     qt/3.3.8b-51
anaconda/2020.02     matlab/R2016a        qt/5.10.1
anaconda/3-4.3.0     matlab/R2017a        qt/5.12
anaconda/3-5.2.0     matlab/R2017b        qt/5.12.0
idl/8.5.1            matlab/R2018a        qt/5.13.1
idl_DEEPS/8.7.2      matlab/R2018b        qt/5.14.2
java/8u111           matlab/R2019a        qt/5.7.0
java/jdk-12.0.2      perl/5.16.0          qt/5.9.0
julia/0.5.1          perl/5.18.2          ruby/2.4.0
julia/0.6.1          perl/5.24.1          scala/2.12.2
julia/0.6.4          perl/5.30.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: lib ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lftp/4.8.4
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: libraries ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Xvfb/1.10.4                        keras/2.0.9
acml/5.2.0-gfortran                keras/2.1.1
agalma/1.0.0                       keras/2.1.3_py3
armadillo/9.200.4                  lemon/1.3.1
assimp/4.1.0                       leveldb/1.20
assimp/5.0.0                       libcutensor/10.2
blast-legacy/2.2.26                libint/2.5.0
boost/1.44.0                       libpng12/1.2.57
boost/1.49.0                       libspatialindex/1.9.3
boost/1.55                         libtiff/4.0.10
boost/1.57                         libxc/4.3.4
boost/1.62.0-intel                 libzip/0.9-3.1.el6
boost/1.63.0                       lp_solve/5.5.2.5
boost/1.68                         metis/5.1.0
bzip2/1.0.2                        mpfr/3.1.5
c-blosc/1.16.3                     mpfr/4.0.2
cdhit/4.6.8                        mpi4py/3.0.1_py3.6.8
cellranger/3.1.0                   mxnet/1.3.0
cuda/10.0.130                      node.js/6.10.3
cuda/10.1.105                      occa/1.2
cuda/10.2                          openblas/0.2.19
cuda/7.5.18                        openblas/0.2.8
cuda/8.0.61                        openblas/0.3.7
cuda/9.0.176                       opencv/3.2.0
cuda/9.1.85.1                      opencv/3.4.1
cuda/9.2.148                       parmetis/4.0.3
ea-utils/1.04.807                  pcre2/10.35
fastq-tools/0.8                    proj/4.9.3
fftw/2.1.5                         proj/5.2.0
fftw/3.3.6                         proj/7.0.0
fftw/3.3.8                         pytorch/1.3.1
fftw/3.3.8a                        sparsehash/2.0.2
freeglut/3.0.0                     suiteparse/4.5.4
geos/3.4.2                         theano/1.0.1_py3
geos/3.7.1                         transdecoder/5.4.0
geos/3.8.1                         v8/3.14.5
global_arrays/5.6.1                voro++/0.4.6
global_arrays/5.6.1_i8             vrpn/7.33
global_arrays/5.6.1_openmpi_2.0.3  whatshap/Sep2018
gmp/6.1.2                          xz/5.2.4
gsl/1.15                           yaml-cpp/0.6.2
gsl/2.3                            yaml-cpp/0.6.2_intel2019.3
gsl/2.5                            zlib/1.2.11
igraph/0.7.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: library ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
easydict/1.7         nccl/2.4.7           pmclib/1.1
fastq_screen/0.13.0  openslide/3.4.1      pstokes/1.0
multinest/3.10       p7zip/16.02          statsmodels/0.9.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: libraryg ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matplotlib/2.2.4
~~~~~~~~~~~~~~~~~~~~~~~~~~ category: machine learning ~~~~~~~~~~~~~~~~~~~~~~~~~~
1/1.01                            rapidjson/1.1.0
1/2.03                            scikit-learn/0.19.1
attend2u/20180216                 scikit-learn/0.21.2
cudnn/5.1                         tensorflow/1.1.0_cpu
cudnn/6.0                         tensorflow/1.1.0_gpu
cudnn/7.0                         tensorflow/1.13.1_cpu_py3
cudnn/7.4                         tensorflow/1.13.1_gpu
cudnn/7.6                         tensorflow/1.13.1_gpu_keras
cudnn/7.6.5                       tensorflow/1.13.1_gpu_py3
deeparg/Jan2019                   tensorflow/1.14.0_gpu_py36
deeparg/Oct2018                   tensorflow/1.4.1_cpu
deeplabcut/1.01                   tensorflow/1.4.1_cpu_py3
deeplabcut/2.03                   tensorflow/1.4.1_gpu
deeplabcut/2.1.4                  tensorflow/1.4.1_gpu_py3
dlib/19.17                        tensorflow/1.4.1_gpu_py3_cuda9.1
flann/1.8.4                       tensorflow/1.5.0_cpu_py3
hnn/1.0                           tensorflow/1.5.0_gpu
horovod/0.16                      tensorflow/1.5.0_gpu_py3
pcl/1.9.1                         tensorflow/2.0.0_cpu_py37
pcl/1.9.1_nurbs                   tensorflow/2.0.0_gpu_py37
py-faster-rcnn/July2018           tf-horovod/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: math ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
atlas/3.10.3        gmsh/3.0.1          magma/V2.25-5       sage/8.7
blas/3.7.0          lapack/3.4.2        magma/V2.25-5-gpu   sage/9.0
cgal/3.14.1         lapack/3.6.0        magma-gpu/2.4.0     scalapack/2.0.2
fenics/2017.1       lapack/3.7.0        nlopt/2.5.0         sympy/1.4
fenics/2018.1.0     macaulay2/1.12-1    numpy/intel_1.15.1  trlan/2010.09
gap/4.9.1           magma/V2.23-10      rss/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: misc ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mark/Dec18              mysql/8.0.13
mysql/5.7.28            netcdf4-python/4.1.4.2
~~~~~~~~~~~~~~~~~~~~~~~~~ category: molecular dynamics ~~~~~~~~~~~~~~~~~~~~~~~~~
mdanalysis/0.19.2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: mpi ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi/5.6.1_openmpi_2.0.3          mpi/openmpi_1.8.3_gcc
mpi/cave_mvapich2_2.3b_gcc       mpi/openmpi_2.0.3_gcc
mpi/cave_mvapich2_2.3b_intel     mpi/openmpi_2.0.3_intel
mpi/cave_mvapich2_2.3rc2_gcc     mpi/openmpi_2.0.3_pgi
mpi/mvapich2-2.0rc1_gcc          mpi/openmpi_3.1.3_gcc
mpi/mvapich2-2.3.1_gcc           mpi/openmpi_3.1.6_gcc
mpi/mvapich2-2.3a_gcc            mpi/openmpi_4.0.0_gcc
mpi/mvapich2-2.3a_intel          mpi/openmpi_4.0.0_gcc_i8
mpi/mvapich2-2.3a_pgi            mpi/openmpi_4.0.1_gcc
mpi/mvapich2-2.3b_gcc            osu-mpi/5.3.2
mpi/openmpi_1.10.7_gcc           osu-mpi/5.6.2_mvapich2-2.3a_gcc
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: mri ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
afni/17.1.00                      freesurfer/6.0.0
afni/18.2.06                      freesurfer/6.0.0_rh7
afni/19.0.17                      freesurfer/6.0.0_rh7-30-Nov-2018
afni/19.3.08                      fsl/5.0.10
afni/19.3.10                      fsl/6.0.0
afni/20.0.03                      fsl/6.0.3
afni/20.1.06                      mricron/05-2016
ants/2.1.0                        mricron/12-2012
ants/2.3.1                        mricron/2019-09
dsi/april2019                     tortoise/3.1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: neuro ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dtitk/2.3.1  qit/1.0
~~~~~~~~~~~~~~~~~~~~~~~ category: numerical optimization ~~~~~~~~~~~~~~~~~~~~~~~
bayop/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: other ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sbt/1.2.3
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: package ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ffte/6.0      ffte/6.0/mpi
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: performance ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ior/2.10.3                       osu-mpi/5.3.2
ior/3.0.1                        osu-mpi/5.6.2_mvapich2-2.3a_gcc
ipm/2.0.6                        papi/5.4.3
ipm/2.0.6_r
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: physics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
casa/5.1.2                    hoomd/2.9.0
geant/4.10.04.p01             jdftx/1.4.2
geant/4.10.3                  lumericalfdtd/8.16.982
geant/4.10.5                  mcx/20180525
geant/4.9.4.p04               mcxlab/2017.7
gpaw/0.10.0                   mujoco-py/1.50.1.23
gpaw/1.2.0                    pymultinest/2.9
gpaw/1.2.0_mvapich2-2.3a_gcc  root/6.10
~~~~~~~~~~~~~~~~~~~~~~ category: profiling and debugging ~~~~~~~~~~~~~~~~~~~~~~~
cube/4.3.4                 ncdu/1.14
ddd/3.3.12                 scalasca/2.3.1_intel
gdb/7.12.1                 scorep/3.0_intel_mvapich2
gperftools/2.5             valgrind/3.12.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: python ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
numpydoc/0.9.1       pytables/3.5.2       six/1.12.0
plotly/3.9.0         python_igraph/0.7.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: python library ~~~~~~~~~~~~~~~~~~~~~~~~~~~
wx/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: software ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
annovar/2018Apr16  orthofinder/2.2.7  orthofinder/2.3.3
~~~~~~~~~~~~~~~~~~~~~~~~ category: software management ~~~~~~~~~~~~~~~~~~~~~~~~~
maven/3.2.2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: solvers ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigen/3.2.2       mumps/5.0.2-seq   pastix/5.2.3      scotch/6.0.4
eigen/3.3.2       openfoam/4.1      petsc/3.7.5       suiteparse/4.5.4
mcl/12.135        openfoam/7.0      petsc/3.7.7       trilinos/12.12.1
mumps/5.0.2       pari/2.11.2       petsc/3.8.3
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: stat ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
seaborn/0.10.0
~~~~~~~~~~~~~~~~~~~~ category: statistical analysis package ~~~~~~~~~~~~~~~~~~~~
glmnet/1.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: statistics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
R/3.3.2               R/3.6.3               mallet/2.0.8rc3
R/3.4.0               R/4.0.0               rstudio/1.0.44
R/3.4.3               SAS/9.4               rstudio/1.1.463
R/3.4.3_mkl           SAS/9.4b              stata/14
R/3.4.4               caffe/1.0             stata/15
R/3.5.2               caffe/1.0_CPU_ONLY    wfu_pickatlas/3.0.5b
R/3.6.0               caffe/1.0_with_cudnn
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: sys ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dos2unix/7.4.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: system ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wayland/1.18.0          xfce/4.10
wayland-protocols/1.20  xfce/4.12
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tex ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pandoc/2.9.2.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: text editing ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texstudio/2.12.16
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tool ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dcm2niix/25.0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tool kit ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
subread/1.6.2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tools ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
idr/2.0.2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: util ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libevent/2.1.8  pdftk/2.02
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: utilities ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
atom/1.19.3            curl/7.61.1            mercurial/5.1
bamaddrg/20180928      cvs/1.11.23            perf-tools/2.7
binutils/2.29.1        depot_tools/Jan2019    rclone/1.51.0
binutils/2.31          engineering/19.10.237  rsync/3.1.3
chrome/55.0            firefox/56.0.2         sublime/2.0.2
chrome/73.0            firefox/59.0.2         svn/1.8.17
cmake/3.10.1           firefox/66.0.3         svn/1.9.5
cmake/3.15.4           firefox/68.0           texinfo/4.13a
cmake/3.6.3            ghostscript/9.21       texlive/2018
cmake/3.8.0            git/2.10.2             vim/8.1
colordiff/1.0.18       git/2.20.2             vim/8.1_py3
comsol/5.4             h4cf/1.2               vnc-apps/7.2
cppunit/1.14.0         itstool/2.0.4          xxdiff/4.0.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: utility ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
h5py/2.9.0
~~~~~~~~~~~~~~~~~~~ category: version record for large files ~~~~~~~~~~~~~~~~~~~
gitlfs/2.7.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: vision ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
opencv/3.2.0         scikit-image/0.13.1  tesseract/3.05.00
opencv/3.4.1         scikit-image/0.15.0  tesseract/4.00.00
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: visualization ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
atomeye/3.0                    osgearth/2.7
basemap/1.2.0                  ovito/2.8.2
blender/2.78                   ovito/2.9.0
blender/2.79                   paraview/5.1.0
cartopy/0.16.0                 paraview/5.1.0_yurt
cartopy/0.17.0                 paraview/5.4.1
cave-demo/yurt                 paraview/5.6.0_no_scalable
cave-utils/yurt                paraview/5.6.0_yurt
ferret/7.1                     photoscan/1.3.0
gdal/2.1.3                     pyshp/2.0.1
gdal/2.4.0                     shapely/1.6.4
gdal/3.0.4                     tecplot/2017
gephi/0.9.2                    tecplot/2017R3
gimp/2.8.22                    tecplot/2018R2
gimp/2.9.6                     unity/Unity-2017.3.0b1
glm/0.9.9                      unity/unity-editor-2017.2.0f3
glm/0.9.9.5                    visit/2.13.2
grace/5.1.25                   visit/2.7.2
graphviz/2.40.1                vmd/1.9.3
minvr/0.3master                vrg3d/265
minvr/0.4                      vrg3d/265_compat
minvr/beta                     vrg3d/265_demos
minvr/beta-bleeding            vtk/5.6.1
minvr/dev_ben                  vtk/7.1.1
ncview/2.1.7                   vtk/7.1.1a
openscad/2015.03-3             vtk/8.1.0
openscenegraph/3.4.0           xcrysden/1.5.60
~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: vizualization ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
metashape/1.5.4
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: weather ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wrf/3.6.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: workshop ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
workshop/1.0  workshop/3.0
Oscar High-Performance Computing (HPC)
Basic Use Intro to OscarAvailable Software
Logging In VNC LoginSSH Login
Software-Specific MATLABMathematicaSage
oscar/modules.txt · Last modified: 2020/05/18 14:11 by blavall