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Oscar: Software Modules
If you require a software package that is not currently available on the Oscar cluster, please contact ICERM's IT staff and we will work with CCV to get the software installed.
Currently Available Modules
This list is current as of November 6, 2019. To see the most up to date list of software modules, log into your Oscar account and run the command module avail.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JAGS/4.2.0 cesm_post_process/Oct18 pigz/2.4 bxh_xcede_tools/1.11.14 confocal/1.0 ~~~~~~~~~~~~~~~~~~~~~~ category: Microstructure modeling ~~~~~~~~~~~~~~~~~~~~~~ oof2/2.1.17 ~~~~~~~~~~~~~~~~~~~~~~~~~ category: access controlled ~~~~~~~~~~~~~~~~~~~~~~~~~ Molpro/2012.1.15 gaussian/g09 vasp/5.4.4 Molpro/2015_gcc gaussian/g09-D01 vasp/5.4.4_intel Molpro/2015_serial gaussian/g09-D01-TEST vasp/5.4.4a Molpro/2018.2_ga vasp/5.4.1 Molpro/2018.2_no_ga vasp/5.4.1_debug ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: chemistry ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ schrodinger/2017-3 ~~~~~~~~~~~~~~~~~~~~~~~~ category: graph partitioning ~~~~~~~~~~~~~~~~~~~~~~~~~ metis/5.1.0 parmetis/4.0.3 scotch/6.0.4 ~~~~~~~~~~~~~~~~~~~~~~~~~ category: image processing ~~~~~~~~~~~~~~~~~~~~~~~~~~ multinest/3.10 openslide/3.4.1 pstokes/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: libraries ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ astropy/3.2.1 tensorflow/1.1.0_gpu blas/3.7.0 tensorflow/1.13.1_cpu_py3 cudnn/5.1 tensorflow/1.13.1_gpu cudnn/6.0 tensorflow/1.13.1_gpu_keras cudnn/7.0 tensorflow/1.13.1_gpu_py3 cudnn/7.4 tensorflow/1.13.1_gpu_py36 dlib/19.17 tensorflow/1.14.0_gpu_py36 flann/1.8.4 tensorflow/1.4.1_cpu hnn/1.0 tensorflow/1.4.1_cpu_py3 horovod/0.16 tensorflow/1.4.1_gpu lapack/3.6.0 tensorflow/1.4.1_gpu_py3 lapack/3.7.0 tensorflow/1.4.1_gpu_py3_cuda9.1 mumps/5.0.2 tensorflow/1.5.0_cpu_py3 mumps/5.0.2-seq tensorflow/1.5.0_gpu pcl/1.9.1 tensorflow/1.5.0_gpu_py3 pcl/1.9.1_nurbs tensorflow/2.0.0_cpu_py37 scalapack/2.0.2 tensorflow/2.0.0_gpu_py37 tensorflow/1.1.0_cpu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: library ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openslide-python/1.1.1 ~~~~~~~~~~~~~~~~~~~~~~~~~ category: machine learning ~~~~~~~~~~~~~~~~~~~~~~~~~~ keras/2.0.9 keras/2.1.1 keras/2.1.3_py3 nccl/2.4.7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: math ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gsl/1.15 gsl/2.3 gsl/2.5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: package ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ subread/1.6.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: software ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mriconvert/2.1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: utility ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mriconvert/2.1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: visualization ~~~~~~~~~~~~~~~~~~~~~~~~~~~ mayavi/4.6.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: (none) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ HiC-Pro/2.7.8 ncl/6.4.0 repeatmodeler/1.0.11 HiC-Pro~/2.10.0 neuron/7.5 skewer/0.2.1 canu/1.7.1 pdflib/7.0.5 squashfs/4.3 fiji/2017-java6 pypy/6.0.0_2.7 tmux/2.8 grads/2.2.0 pypy/6.0.0_3.5 transrate/1.0.3 mumax/3.9.3 repeatmasker/4.0.7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Applied Maths ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ oof2/2.1.17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Astrophysics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ polychord/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Bioinformatics ~~~~~~~~~~~~~~~~~~~~~~~~~~~ MultiQC/1.0 muscle/3.8.31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: CAD ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ freecad/0.18 librecad/2.0 ~~~~~~~~~~~~~~~~~~~~~~~ category: Computer Architecture ~~~~~~~~~~~~~~~~~~~~~~~~ risc/1.0 ~~~~~~~~~~~~~~~~~~~~ category: Executable for ceckpointings ~~~~~~~~~~~~~~~~~~~~ dmtcp/2.6.0 ~~~~~~~~~~~~~~~~~~~ category: Flag for CMAKE for fast build ~~~~~~~~~~~~~~~~~~~~ ninja/1.9.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: GENETEICS ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensoft/6.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Genomic ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Genrich/0.5 mcscanx/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Genomic Library ~~~~~~~~~~~~~~~~~~~~~~~~~~~ redundans/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Genomics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ beast/1.10.4 beast/2.5.2 ~~~~~~~~~~~~~~~~~~~ category: Genomics Sequencing Alignment ~~~~~~~~~~~~~~~~~~~~ qualimap/2.2.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Graphics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ beagle/1.0.0 ~~~~~~~~~~~~~~~~~~~~~~~~ category: Helper function type ~~~~~~~~~~~~~~~~~~~~~~~~ datamash/1.3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: I/O ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdf5/1.10.0 netcdf/3.6.3 hdf5/1.10.1_parallel netcdf/4.4.1.1_gcc hdf5/1.10.5 netcdf/4.4.1.1_intel hdf5/1.10.5_fortran netcdf/4.4.1.1_pgi hdf5/1.10.5_openmpi_4.0.0_gcc netcdf/4.7.0_intel2019.3 hdf5/1.10.5_parallel sqlite/3.25.2 jasper/1.900.1-intel udunits/1.12.11 nco/4.6.6 udunits/2.2.24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: IDE ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meshlab/20190129_qt59 spyder/3.3.5 ~~~~~~~~~~~~~~~~~ category: Image processing and visualization ~~~~~~~~~~~~~~~~~ opencv-python/4.1.0.25 ~~~~~~~~~~~~~~~~~~~~~~~ category: Library for optimizer ~~~~~~~~~~~~~~~~~~~~~~~~ numbbo/2.3_python2 numbbo/2.3_python3 ~ category: Material sceince: https://icet.materialsmodeling.org/overview.html ~ icet/0.3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Medical imaging ~~~~~~~~~~~~~~~~~~~~~~~~~~~ mricrogl/1.0 ~~~~~~~~~~~~~~~ category: Multifunctional Wavefunction Analyzer ~~~~~~~~~~~~~~~~ multiwfn/3.3.9 ~~~~~~~~~~~~~~~~~~~~~~~~~ category: Numerical Library ~~~~~~~~~~~~~~~~~~~~~~~~~~ ngsolve/6.2.1901 ~~~~~~~~~~~~~~~~~~~~~~~~~~ category: Numerical Solver ~~~~~~~~~~~~~~~~~~~~~~~~~~ dedalus/2.1810 dedalus/2.1905 dedalus/Sep2019 nektar++/4.5.0 ~~~~~~~~~~~~~~~~~~~~ category: Tool for Image Manipulation ~~~~~~~~~~~~~~~~~~~~~ netpbm/10.47.71 ~~~~~~~~~~~~~~~ category: Visualization Package Qt's Python API ~~~~~~~~~~~~~~~~ pyqt/4.12.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: X ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ turbovnc/2.1.1 turbovnc/2.2.1 turbovnc/2.2.b1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: astronomy ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ares/0.1 iraf/2.16 supermongo/2.4.34 ares/0.5 iraf/2.16.1+2018.11.01 swarp/2.38 ccfits/2.5 lsst/14.0 theli/1.9.5 cfitsio/3.450 scamp/2.0.4 wcstools/3.9.5 ds9/7.6 sextractor/2.19.5 galfit/3.0.5 sextractor/2.8.6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: astrophysics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fiat/Oct2019 ~~~~~~~~~~~~~~~~~~~~~~~~~ category: astropy computing ~~~~~~~~~~~~~~~~~~~~~~~~~~ astropy/3.2.1 ~~~~~~~~~~~~~~~~~~~~~ category: binary for genome studies ~~~~~~~~~~~~~~~~~~~~~~ bedGraphToBigWig/1.04 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: bio ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAP/2013-11-29 metabat/2.12.1 abyss/2.1.1 metavelvet/1.2.01 ale/20140120 migrate/3.6.11 aliview/1.25 mira/4.0.2 amplisat/20170208 mne/0.17.0 angsd/0.920 mothur/1.39.5 anvio/5.2 mrbayes/3.2.6 anvio/5.5 msmc/1.0.0 arb/6.0.6 msmc/1.1.0 augustus/3.3 msprime/0.7.0 bamcleave/Oct2018 msprime/0.7.2 bamtools/2.3.0 mummer/4.0.0.beta2 bamtools/2.4.1 namd/2.11-multicore bbmap/38.23 namd/2.13b1-multicore bbtools/38.12 nextclip/1.3.1 bcftools/1.9 nseg/20181012 bcl2fastq/2.20.0 obitools/1.2.12 bedops/2.4.35 oligotyping/2.0 bedtools/2.25.0 opera/2.0.6 bedtools/2.26.0 orthomcl/2.0.9 biolite/1.0.0 paml/4.8 biomed/1.0 pandaseq/2.11 biopython/1.66 paup/4.0a157 biopython/1.73 paup/4.0a166 bismark/0.20.0 pbsuite/15.8.24 blast/2.2.30+ pcangsd/0.98 blast/2.6.0+ picard-tools/2.9.2 blast/2.7.1+ pilon/1.22 blast/2.8.1+ plink/1.07 blast/2.9.0+ plink/1.90 blat/36x2 plink/2.00 bowtie/1.2.0 polyphen/2.2.2 bowtie2/2.3.0 prinseq/0.20.4 bowtie2/2.3.5.1 prodigal/2.6.3 braker/2.1.0 psmc/0.6.5 busco/3.0.2 psmc/0.6.5a bwa/0.7.15 pymol/2.2b ccp4/7.0 qctool/2.0 circlator/1.5.5 qiime/1.9.1 conn/16b quast/5.0.0 conn/18a raremetal/4.14.1 conn/18b raxml/8.2.10 connectome_workbench/1.3.1 raxml-ng/0.9.0 connectome_workbench/1.3.2 recon/1.08 cpac/1.0.1 repeatscout/1.0.5 cpac/1.5.0 revbayes/1.0.5 cutadapt/1.14 revbayes/1.0.6 dada2/1.4.1 rmblastn/2.6.0 dada2/1.8 rsem/1.3.1 dbg2olc/Sep2018 salmon/0.11.3 dendropy/4.2.0 salmon/0.8.2 diamond/0.9.12 samtools/0.1.18 diamond/0.9.24 samtools/1.3.1 dida/1.0.1 samtools/1.4.1 diffreps/1.55.6 samtools/1.9 dlcpar/1.1 schrodinger/2017-3 edge-pro/1.3.1 selscan/1.2.0a eems/1.0 seqkit/0.10.1 emboss/6.6.0 seqtk/1.3 entap/0.8.1-beta sga/0.10.15 entap/0.8.4-beta sift/6.2.1 exonerate/2.2.0 sift4g/2.0.0 fastme/2.1.5 skesa/1.68 fastqc/0.11.5 slicer/4.10.0 fastsimcoal/2 slim/3.1 fasttree/2.1.10 slim/3.2.1 fasttree/2.1.11 slim/3.3 fastuniq/1.1 snippy/Oct2017 fastx-toolkit/2.6 spades/3.10.1 fgap/1.8.1 spades/3.13.0 fgbio/0.6.1 span/0.10.0.4787 figtree/1.4.4 spm/spm12 flashpca/2.0 sratoolkit/2.8.2-1 freebayes/1.1.0 stacks/2.2 freebayes/1.2.0 stampy/1.0.32 gatk/4.0.9.0 star/2.6.1b gdcclient/1.4.0 star/2.7.2a genemark/4.33 starfusion/1.7.0 hapbin/1.3.0 stringtie/1.3.3b hisat2/2.1.0 stringtie/1.3.4d hmmer/3.1b2 tabix/0.2.6 homer/4.10 tablemaker/2.1.1 hotnet2/1.2.1 taxonkit/0.3.0 htseq/0.9.1 tophat/2.1.1 idba/1.1.3 transabyss/2.0.1 idemp/20180928 transindel/20181017 interproscan/5.26-65.0 trf/4.09 interproscan/5.27-66.0 trimal/1.4 interproscan/5.28-67.0 trimgalore/0.5.0 interproscan/5.32-71.0 trimmomatic/0.36 interproscan/5.33-72.0 trinity/2.4.0 iq-tree/1.6.7 trinity/2.8.4 jellyfish/1.1.11 usearch/5.2.32 jellyfish/2.2.10 usearch/8.1.1861 kneaddata/0.6.1 varscan/2.4.3 kraken/2.0.7-beta vcftools/0.1.16 last/956 velvet/1.2.10 macs/2.1.1 velvet/1.2.10a mafft/7.310-with-extensions viennarna/2.4.9 maker/2.31.10 vmd/1.9.3 maxbin2/2.2.5 vsearch/2.11.1 megahit/1.1.3 weblogo/2.8.2 meraculous/2.2.6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: bioinformatics ~~~~~~~~~~~~~~~~~~~~~~~~~~~ umitools/1.0.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: biology ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ haplostrips/1.2.1 libBigWig/0.4.4 mmsplice/0.2.7 htslib/1.9 meme/5.0.5 wiggletools/1.2.3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: build tool ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scons/3.0.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: cave ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gigapixelviewer/alpha minvr/dev_ben vrg3d/265_compat minvr/0.3master planetaryviewer/alpha vrg3d/265_demos minvr/0.4 scalable/20150828 vrpn/7.33 minvr/beta scalable/opengl32+ minvr/beta-bleeding vrg3d/265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: chemistry ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Molpro/2012.1.15 molden/5.7 Molpro/2015_gcc mrcc/2014-intel Molpro/2015_serial mrcc/2014-intel-threaded Molpro/2018.2_ga mrcc/2018-intel Molpro/2018.2_no_ga mrcc/2018-intel-threaded ambertools/amber17 nwchem/6.8-openmpi ambertools/amber17_lic openbabel/2.4.1 ase/3.13.0 openmolcas/18.09.617 ase/3.8.1 orca/4.0.1.2 crossrate/2016.3.23 orca/4.1.1 dacapo/2.7.16_mvapich2_intel pyscf/1.4.7 elk/5.2.14 pyscf/1.6.3 gaussian/g09 qchem/5.0.2 gaussian/g09-D01 qchem/5.0.2-openmpi gaussian/g09-D01-TEST qmcpack/3.7.0 gaussview/14Aug20 quantumespresso/6.1 gromacs/2018.2 quantumespresso/6.3 gromacs/2018.2_gpu quantumespresso/6.4 hande/1.1.1 quantumespresso/6.4.1 hande/1.1.1_64 rotd/2014-11-15_mvapich2 hande/1.1.1_debug sharc/2.0 hotbit/10mar17 vasp/5.4.1 lammps/11Aug17 vasp/5.4.1_debug lammps/11Aug17_serial vasp/5.4.4 lammps/16Mar18 vasp/5.4.4_intel lammps/17Nov16 vasp/5.4.4a lammps/22Aug18 xcrysden/1.5.60 lammps/7Aug19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: clients ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aspera/3.8.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: climate ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cesm/1.2.1 cesm/1.2.2 cesm/2.1.1 esmf/7.1.0r esmf/8.0.0b ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: compilers ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Xvfb/1.10.4 cuda/9.1.85.1 gcc/7.2 java/jdk-12.0.2 clang/3.9.1 cuda/9.2.148 gcc/8.3 llvm/3.8.1 clang/7.0.0 gcc/4.5.4 intel/2011.11.339 llvm/4.0.0 clang/7.1.0 gcc/4.7.2 intel/2013.1.106 nag/6.2 cuda/10.0.130 gcc/4.9.4 intel/2017.0 pgi/16.7 cuda/7.5.18 gcc/5.4 intel/2018.1 swig/3.0.10 cuda/8.0.61 gcc/6.2 intel/2019.3 cuda/9.0.176 gcc/6.3 java/8u111 ~~~~~~~~~~~~~~~~~~~~~~~ category: computer architecture ~~~~~~~~~~~~~~~~~~~~~~~~ llvmOpenmp/1.0 llvmOpenmp/2.0 ~~~~~~ category: cross webbrowser web application development environment ~~~~~~ chromedriver/2.46 ~~~~~~~~~~~~~~ category: data analysis(http://www.mega-nerd.com/) ~~~~~~~~~~~~~~ libsnd/1.0.28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: data science ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ catboost/0.8.1 catboost/0.8.1_py3 pandas/py_3.5.2 pandas/py_3.6.6 ~~~~~~~~~~~~~~~~~~~~~~~ category: data structure library ~~~~~~~~~~~~~~~~~~~~~~~ dcm2bids/2.1.4 ~~~~~~~~~~~~~~~~~~~~~~ category: debugging and profiling ~~~~~~~~~~~~~~~~~~~~~~~ forge/18.2.3 forge/19.1.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: dev ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ googletest/1.8.0 qemu/4.1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: devel ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bazel/0.23.0 glew/2.1.0 opengl/nvidia-410.72 bazel/0.4.4 opengl/mesa-12.0.6 protobuf/3.4.1 bazel/0.5.4 opengl/nvidia-375.66 protobuf/3.6.0_gcc5.4 glew/1.13.0 opengl/nvidia-390.30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: engineering ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ abaqus/2017 ansys/18.1 synopsys/2018.06 abaqus/6.12sp2 comsol/5.4 synopsys/L_2016.03-SP2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: fMRI ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ brainiak/Feb2018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: fonts ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ freetype/2.7.1 ~~~~~~~~~~~~~~~~~~~~~~~ category: gene and species tree ~~~~~~~~~~~~~~~~~~~~~~~~ phyldog/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: genomic ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ admixture/1.3.0 glactools/1.0.7 pybigwig/0.3.15 deeptools/3.2.1 partitionfinder/2.1.1 pysam/0.15.2 deeptoolsintervals/0.1.7 py2bit/0.3.0 pyslim/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: graphics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gnuplot/5.2.3 inkscape/Sep-2019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: image ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c3d/1.0.0 ffmpeg/4.0.1 isis/3.5.1 openexr/2.2.1 ffmpeg/3.2.4 imagemagick/7.0.7 libgd/2.2.5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ category: image converter ~~~~~~~~~~~~~~~~~~~~~~~~~~~ mriconvert/2.1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~ category: image processing ~~~~~~~~~~~~~~~~~~~~~~~~~~ libgif/5.1.9 libjpeg-turbo/2.0.2 openjpeg/2.3.1 libjpeg/9.0 mayavi/4.6.0 openslide-python/1.1.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: languages ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ R/3.3.2 julia/0.7.0 perl/5.30.0 R/3.4.0 julia/1.0 perl/5.8.9 R/3.4.3 julia/1.0.2 python/2.7.12 R/3.4.3_mkl julia/1.1.0 python/2.7.12_clean R/3.4.4 julia/1.2.0 python/2.7.16 R/3.5.2 lua/5.3.4 python/3.5.2 R/3.6.0 maple/16 python/3.6.6 anaconda/2-4.3.0 mathematica/10.3.1 python/3.6.6_test anaconda/2-5.3.0 mathematica/11.0 python/3.7.4 anaconda/3-4.3.0 matlab/R2016a qt/3.3.8b anaconda/3-5.2.0 matlab/R2017a qt/3.3.8b-51 idl/8.5.1 matlab/R2017b qt/5.10.1 idl_DEEPS/8.7.2 matlab/R2018a qt/5.12 java/8u111 matlab/R2018b qt/5.13.1 java/jdk-12.0.2 matlab/R2019a qt/5.7.0 julia/0.5.1 perl/5.16.0 qt/5.9.0 julia/0.6.1 perl/5.18.2 ruby/2.4.0 julia/0.6.4 perl/5.24.1 scala/2.12.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: lib ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lftp/4.8.4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: libraries ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Xvfb/1.10.4 keras/2.0.9 acml/5.2.0-gfortran keras/2.1.1 agalma/1.0.0 keras/2.1.3_py3 armadillo/9.200.4 lemon/1.3.1 blast-legacy/2.2.26 leveldb/1.20 boost/1.44.0 libint/2.5.0 boost/1.49.0 libpng12/1.2.57 boost/1.55 libtiff/4.0.10 boost/1.57 libxc/4.3.4 boost/1.62.0-intel libzip/0.9-3.1.el6 boost/1.63.0 lp_solve/5.5.2.5 boost/1.68 metis/5.1.0 bzip2/1.0.2 mpfr/3.1.5 c-blosc/1.16.3 mpfr/4.0.2 cdhit/4.6.8 mxnet/1.3.0 cuda/10.0.130 node.js/6.10.3 cuda/7.5.18 occa/1.2 cuda/8.0.61 openblas/0.2.19 cuda/9.0.176 openblas/0.2.8 cuda/9.1.85.1 opencv/3.2.0 cuda/9.2.148 opencv/3.4.1 ea-utils/1.04.807 parmetis/4.0.3 fftw/2.1.5 proj/4.9.3 fftw/3.3.6 proj/5.2.0 fftw/3.3.8 sparsehash/2.0.2 fftw/3.3.8a suiteparse/4.5.4 freeglut/3.0.0 theano/1.0.1_py3 geos/3.4.2 transdecoder/5.4.0 geos/3.7.1 v8/3.14.5 global_arrays/5.6.1 voro++/0.4.6 global_arrays/5.6.1_i8 vrpn/7.33 global_arrays/5.6.1_openmpi_2.0.3 whatshap/Sep2018 gmp/6.1.2 xz/5.2.4 gsl/1.15 yaml-cpp/0.6.2 gsl/2.3 yaml-cpp/0.6.2_intel2019.3 gsl/2.5 zlib/1.2.11 igraph/0.7.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: library ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ easydict/1.7 nccl/2.4.7 pstokes/1.0 fastq_screen/0.13.0 openslide/3.4.1 statsmodels/0.9.0 multinest/3.10 p7zip/16.02 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: libraryg ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matplotlib/2.2.4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ category: machine learning ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1/1.01 scikit-learn/0.21.2 1/2.03 tensorflow/1.1.0_cpu attend2u/20180216 tensorflow/1.1.0_gpu cudnn/5.1 tensorflow/1.13.1_cpu_py3 cudnn/6.0 tensorflow/1.13.1_gpu cudnn/7.0 tensorflow/1.13.1_gpu_keras cudnn/7.4 tensorflow/1.13.1_gpu_py3 deeparg/Jan2019 tensorflow/1.13.1_gpu_py36 deeparg/Oct2018 tensorflow/1.14.0_gpu_py36 deeplabcut/1.01 tensorflow/1.4.1_cpu deeplabcut/2.03 tensorflow/1.4.1_cpu_py3 dlib/19.17 tensorflow/1.4.1_gpu flann/1.8.4 tensorflow/1.4.1_gpu_py3 hnn/1.0 tensorflow/1.4.1_gpu_py3_cuda9.1 horovod/0.16 tensorflow/1.5.0_cpu_py3 pcl/1.9.1 tensorflow/1.5.0_gpu pcl/1.9.1_nurbs tensorflow/1.5.0_gpu_py3 py-faster-rcnn/July2018 tensorflow/2.0.0_cpu_py37 rapidjson/1.1.0 tensorflow/2.0.0_gpu_py37 scikit-learn/0.19.1 tf-horovod/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: math ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atlas/3.10.3 gap/4.9.1 magma/V2.23-10 sage/8.7 blas/3.7.0 gmsh/3.0.1 magma-gpu/2.4.0 scalapack/2.0.2 cgal/3.14.1 lapack/3.6.0 nlopt/2.5.0 sympy/1.4 fenics/2017.1 lapack/3.7.0 numpy/intel_1.15.1 trlan/2010.09 fenics/2018.1.0 macaulay2/1.12-1 rss/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: misc ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mark/Dec18 mysql/8.0.13 netcdf4-python/4.1.4.2 ~~~~~~~~~~~~~~~~~~~~~~~~~ category: molecular dynamics ~~~~~~~~~~~~~~~~~~~~~~~~~ mdanalysis/0.19.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: mpi ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpi/5.6.1_openmpi_2.0.3 mpi/openmpi_1.8.3_gcc mpi/cave_mvapich2_2.3b_gcc mpi/openmpi_2.0.3_gcc mpi/cave_mvapich2_2.3b_intel mpi/openmpi_2.0.3_intel mpi/cave_mvapich2_2.3rc2_gcc mpi/openmpi_2.0.3_pgi mpi/mvapich2-2.0rc1_gcc mpi/openmpi_3.1.3_gcc mpi/mvapich2-2.3.1_gcc mpi/openmpi_4.0.0_gcc mpi/mvapich2-2.3a_gcc mpi/openmpi_4.0.0_gcc_i8 mpi/mvapich2-2.3a_intel mpi/openmpi_4.0.1_gcc mpi/mvapich2-2.3a_pgi osu-mpi/5.3.2 mpi/mvapich2-2.3b_gcc osu-mpi/5.6.2_mvapich2-2.3a_gcc mpi/openmpi_1.10.7_gcc ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: mri ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ afni/17.1.00 freesurfer/6.0.0 afni/18.2.06 freesurfer/6.0.0_rh7 afni/19.0.17 freesurfer/6.0.0_rh7-30-Nov-2018 afni/19.3.08 fsl/5.0.10 afni/19.3.10 fsl/6.0.0 ants/2.1.0 mricron/05-2016 ants/2.3.1 mricron/12-2012 dsi/april2019 tortoise/3.1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: other ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sbt/1.2.3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: package ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ffte/6.0 ffte/6.0/mpi ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: performance ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ior/2.10.3 osu-mpi/5.3.2 ior/3.0.1 osu-mpi/5.6.2_mvapich2-2.3a_gcc ipm/2.0.6 papi/5.4.3 ipm/2.0.6_r ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: physics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ casa/5.1.2 gpaw/1.2.0_mvapich2-2.3a_gcc geant/4.10.04.p01 jdftx/1.4.2 geant/4.10.3 lumericalfdtd/8.16.982 geant/4.10.5 mcx/20180525 geant/4.9.4.p04 mcxlab/2017.7 gpaw/0.10.0 mujoco-py/1.50.1.23 gpaw/1.2.0 root/6.10 ~~~~~~~~~~~~~~~~~~~~~~ category: profiling and debugging ~~~~~~~~~~~~~~~~~~~~~~~ cube/4.3.4 scalasca/2.3.1_intel ddd/3.3.12 scorep/3.0_intel_mvapich2 gdb/7.12.1 valgrind/3.12.0 gperftools/2.5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: python ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ numpydoc/0.9.1 pytables/3.5.2 six/1.12.0 plotly/3.9.0 python_igraph/0.7.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: python library ~~~~~~~~~~~~~~~~~~~~~~~~~~~ wx/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: software ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ annovar/2018Apr16 orthofinder/2.2.7 orthofinder/2.3.3 ~~~~~~~~~~~~~~~~~~~~~~~~ category: software management ~~~~~~~~~~~~~~~~~~~~~~~~~ maven/3.2.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: solvers ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigen/3.2.2 mumps/5.0.2-seq petsc/3.7.5 suiteparse/4.5.4 eigen/3.3.2 openfoam/4.1 petsc/3.7.7 trilinos/12.12.1 mcl/12.135 pari/2.11.2 petsc/3.8.3 mumps/5.0.2 pastix/5.2.3 scotch/6.0.4 ~~~~~~~~~~~~~~~~~~~~ category: statistical analysis package ~~~~~~~~~~~~~~~~~~~~ glmnet/1.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: statistics ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ R/3.3.2 R/3.6.0 rstudio/1.0.44 R/3.4.0 SAS/9.4 rstudio/1.1.463 R/3.4.3 caffe/1.0 stata/14 R/3.4.3_mkl caffe/1.0_CPU_ONLY stata/15 R/3.4.4 caffe/1.0_with_cudnn R/3.5.2 mallet/2.0.8rc3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: sys ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dos2unix/7.4.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: system ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xfce/4.10 xfce/4.12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: text editing ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ texstudio/2.12.16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tool ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dcm2niix/25.0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tool kit ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ subread/1.6.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: tools ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ idr/2.0.2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: util ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libevent/2.1.8 pdftk/2.02 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: utilities ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atom/1.19.3 cppunit/1.14.0 mercurial/5.1 bamaddrg/20180928 curl/7.61.1 perf-tools/2.7 binutils/2.29.1 cvs/1.11.23 sublime/2.0.2 binutils/2.31 depot_tools/Jan2019 svn/1.8.17 cadence/. firefox/56.0.2 svn/1.9.5 chrome/55.0 firefox/59.0.2 texinfo/4.13a chrome/73.0 firefox/66.0.3 texlive/2018 cmake/3.10.1 firefox/68.0 vim/8.1 cmake/3.15.4 ghostscript/9.21 vim/8.1_py3 cmake/3.6.3 git/2.10.2 vnc-apps/7.2 cmake/3.8.0 git/2.20.2 xxdiff/4.0.1 colordiff/1.0.18 h4cf/1.2 comsol/5.4 itstool/2.0.4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: utility ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ h5py/2.9.0 ~~~~~~~~~~~~~~~~~~~ category: version record for large files ~~~~~~~~~~~~~~~~~~~ gitlfs/2.7.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: vision ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opencv/3.2.0 scikit-image/0.13.1 tesseract/3.05.00 opencv/3.4.1 scikit-image/0.15.0 tesseract/4.00.00 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: visualization ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomeye/3.0 ovito/2.8.2 basemap/1.2.0 ovito/2.9.0 blender/2.78 paraview/5.1.0 blender/2.79 paraview/5.1.0_yurt cartopy/0.16.0 paraview/5.4.1 cartopy/0.17.0 paraview/5.6.0_no_scalable cave-demo/yurt paraview/5.6.0_yurt cave-utils/yurt photoscan/1.3.0 ferret/7.1 pyshp/2.0.1 gdal/2.1.3 shapely/1.6.4 gdal/2.4.0 tecplot/2017 gephi/0.9.2 tecplot/2017R3 gimp/2.8.22 tecplot/2018R2 gimp/2.9.6 unity/Unity-2017.3.0b1 glm/0.9.9 unity/unity-editor-2017.2.0f3 grace/5.1.25 visit/2.13.2 graphviz/2.40.1 visit/2.7.2 minvr/0.3master vmd/1.9.3 minvr/0.4 vrg3d/265 minvr/beta vrg3d/265_compat minvr/beta-bleeding vrg3d/265_demos minvr/dev_ben vtk/5.6.1 ncview/2.1.7 vtk/7.1.1 openscad/2015.03-3 vtk/7.1.1a openscenegraph/3.4.0 vtk/8.1.0 osgearth/2.7 xcrysden/1.5.60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: vizualization ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ metashape/1.5.4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: weather ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wrf/3.6.1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ category: workshop ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ workshop/1.0 workshop/3.0
oscar/modules.txt · Last modified: 2019/11/06 15:29 by blavall